Summary

##            Family               Genus                       Species    
##  Serranidae   :1636   Epinephelus  : 750   Cephalopholis argus  : 518  
##  Acanthuridae :1225   Cephalopholis: 638   Epinephelus merra    : 381  
##  Pomacentridae: 615   Acanthurus   : 489   Myripristis berndti  : 364  
##  Holocentridae: 522   Ctenochaetus : 429   Ctenochaetus striatus: 297  
##  Apogonidae   : 381   Myripristis  : 364   Centropyge flavissima: 251  
##  Balistidae   : 332   Centropyge   : 296   Plectropomus laevis  : 248  
##  (Other)      :1658   (Other)      :3403   (Other)              :4310  
##                   ID            Agei              Ri        
##  GAM18_B099        :  31   Min.   : 0.000   Min.   :0.0000  
##  AC_AC_SC_03_16_001:  28   1st Qu.: 1.000   1st Qu.:0.4031  
##  GAM18_B007        :  28   Median : 4.000   Median :0.6054  
##  GAM18_B123        :  26   Mean   : 4.868   Mean   :0.6959  
##  GAM18_A075        :  25   3rd Qu.: 7.000   3rd Qu.:0.8793  
##  GAM18_A168        :  25   Max.   :30.000   Max.   :3.7845  
##  (Other)           :6206                    NA's   :366     
##      Agecpt            Rcpt             Lcpt             L0p       
##  Min.   : 0.000   Min.   :0.1517   Min.   : 28.11   Min.   :1.450  
##  1st Qu.: 6.000   1st Qu.:0.6445   1st Qu.:145.00   1st Qu.:1.700  
##  Median : 9.000   Median :0.8778   Median :206.13   Median :1.800  
##  Mean   : 9.738   Mean   :1.0064   Mean   :233.01   Mean   :2.015  
##  3rd Qu.:13.000   3rd Qu.:1.1700   3rd Qu.:278.29   3rd Qu.:1.950  
##  Max.   :30.000   Max.   :3.8591   Max.   :984.69   Max.   :4.250  
##                                                                    
##       R0p             Li_sp_m          Li_sp_sd         Li_sploc_m    
##  Min.   :0.01202   Min.   :  1.45   Min.   : 0.0000   Min.   :  1.45  
##  1st Qu.:0.02780   1st Qu.: 93.68   1st Qu.: 0.9937   1st Qu.: 83.30  
##  Median :0.03453   Median :156.76   Median : 3.0401   Median :151.49  
##  Mean   :0.03892   Mean   :155.29   Mean   : 4.3780   Mean   :151.78  
##  3rd Qu.:0.04133   3rd Qu.:210.32   3rd Qu.: 6.3095   3rd Qu.:207.16  
##  Max.   :0.08564   Max.   :923.84   Max.   :51.9440   Max.   :923.54  
##                    NA's   :1524     NA's   :1524      NA's   :1446    
##   Li_sploc_sd        Biomass             Location   
##  Min.   : 0.000   Min.   :    0.4   Gambiers :2004  
##  1st Qu.: 1.220   1st Qu.:   58.0   Hao      : 651  
##  Median : 4.100   Median :  141.3   Manuae   : 113  
##  Mean   : 5.479   Mean   :  530.1   Marquesas:1187  
##  3rd Qu.: 8.207   3rd Qu.:  313.8   Moorea   :2112  
##  Max.   :49.023   Max.   :12950.0   Tuamotu  : 302  
##  NA's   :1446     NA's   :603                       
##                                       Observer   
##  Fabien Morat                             :4359  
##  Guillemette de Synéty and Jérémy Wicquart:1368  
##  Jean Bienvenu                            : 642  
##                                                  
##                                                  
##                                                  
## 
## [1] 848
## [1] 51

Individual by species

Species n Min length (TL, mm) Max length (TL, mm)
Abudefduf sexfasciatus 16 51 172
Acanthurus achilles 10 189 246
Acanthurus lineatus 8 123 362
Acanthurus nigricans 8 150 210
Acanthurus pyroferus 18 51 230
Acanthurus triostegus 18 147 194
Balistapus undulatus 22 41 283
Caranx melampygus 7 368 712
Centropyge bispinosa 9 28 80
Centropyge flavissima 28 47 150
Cephalopholis argus 41 120 450
Cephalopholis urodeta 8 150 214
Chaetodon citrinellus 13 55 101
Chaetodon ornatissimus 10 122 175
Cheilinus chlorourus 8 96 299
Chlorurus spilurus 34 164 344
Chromis iomelas 20 39 61
Chromis viridis 6 115 148
Ctenochaetus marginatus 15 99 270
Ctenochaetus striatus 26 153 218
Dascyllus aruanus 20 51 71
Dascyllus flavicaudus 8 89 104
Epibulus insidiator 17 157 350
Epinephelus fasciatus 10 123 256
Epinephelus hexagonatus 16 139 268
Epinephelus merra 46 108 261
Epinephelus polyphekadion 14 252 514
Gnathodentex aureolineatus 8 197 255
Gymnosarda unicolor 4 499 985
Halichoeres trimaculatus 13 64 186
Lutjanus fulvus 12 195 289
Lutjanus gibbus 17 113 155
Lutjanus kasmira 37 70 326
Monotaxis grandoculis 9 200 505
Mulloidichthys flavolineatus 14 257 311
Myripristis berndti 30 147 279
Naso lituratus 17 228 432
Naso unicornis 4 488 613
Odonus niger 18 176 350
Ostorhinchus angustatus 15 46 83
Ostorhinchus apogonoides 30 52 96
Parupeneus barberinus 16 82 496
Plectropomus laevis 31 356 957
Pristiapogon taeniopterus 32 51 104
Sargocentron microstoma 23 62 204
Scarus psittacus 8 195 311
Siganus argenteus 11 236 388
Siganus spinus 4 199 254
Stegastes albifasciatus 7 43 94
Stegastes nigricans 14 45 138
Zebrasoma scopas 18 110 166

Individuals by location

Species Gambiers Hao Manuae Marquesas Moorea Tuamotu
Abudefduf sexfasciatus 11 NA NA NA 5 NA
Acanthurus achilles NA NA 10 NA NA NA
Acanthurus lineatus NA NA NA 8 NA NA
Acanthurus nigricans NA NA NA 8 NA NA
Acanthurus pyroferus NA NA NA 18 NA NA
Acanthurus triostegus 3 NA NA 4 11 NA
Balistapus undulatus NA NA NA 8 14 NA
Caranx melampygus NA NA NA NA 5 2
Centropyge bispinosa NA NA NA NA 9 NA
Centropyge flavissima 9 NA NA 12 7 NA
Cephalopholis argus 6 15 NA NA 10 10
Cephalopholis urodeta 8 NA NA NA NA NA
Chaetodon citrinellus NA NA NA NA 13 NA
Chaetodon ornatissimus 4 NA NA 6 NA NA
Cheilinus chlorourus 2 NA NA NA 6 NA
Chlorurus spilurus 13 NA NA NA 19 2
Chromis iomelas NA NA NA NA 20 NA
Chromis viridis 6 NA NA NA NA NA
Ctenochaetus marginatus NA NA NA 15 NA NA
Ctenochaetus striatus 11 NA NA NA 15 NA
Dascyllus aruanus NA NA NA NA 20 NA
Dascyllus flavicaudus 8 NA NA NA NA NA
Epibulus insidiator 12 NA NA NA 5 NA
Epinephelus fasciatus NA NA NA 10 NA NA
Epinephelus hexagonatus NA 16 NA NA NA NA
Epinephelus merra 13 13 NA NA 20 NA
Epinephelus polyphekadion NA 14 NA NA NA NA
Gnathodentex aureolineatus 8 NA NA NA NA NA
Gymnosarda unicolor 4 NA NA NA NA NA
Halichoeres trimaculatus 7 NA NA NA 6 NA
Lutjanus fulvus NA NA NA NA 6 6
Lutjanus gibbus NA NA NA 17 NA NA
Lutjanus kasmira 2 NA NA 35 NA NA
Monotaxis grandoculis 5 NA NA NA 3 1
Mulloidichthys flavolineatus NA NA NA NA 14 NA
Myripristis berndti 7 NA NA 8 15 NA
Naso lituratus 11 NA NA NA 6 NA
Naso unicornis 4 NA NA NA NA NA
Odonus niger NA NA NA 5 13 NA
Ostorhinchus angustatus NA NA NA NA 15 NA
Ostorhinchus apogonoides NA NA NA 30 NA NA
Parupeneus barberinus 5 NA NA 7 4 NA
Plectropomus laevis 12 19 NA NA NA NA
Pristiapogon taeniopterus NA NA NA 32 NA NA
Sargocentron microstoma NA NA NA 6 17 NA
Scarus psittacus NA NA NA NA 3 5
Siganus argenteus 6 NA NA NA 2 3
Siganus spinus NA NA NA NA 4 NA
Stegastes albifasciatus NA NA NA NA 7 NA
Stegastes nigricans 3 NA NA NA 11 NA
Zebrasoma scopas 5 NA NA NA 13 NA

Number of NA by variable

##               NA
## Family         0
## Genus          0
## Species        0
## ID             0
## Agei           0
## Ri           366
## Agecpt         0
## Rcpt           0
## Lcpt           0
## L0p            0
## R0p            0
## Li_sp_m     1524
## Li_sp_sd    1524
## Li_sploc_m  1446
## Li_sploc_sd 1446
## Biomass      603
## Location       0
## Observer       0

Abberant trajectories

Reproducibility

## R version 3.6.1 (2019-07-05)
## Platform: x86_64-w64-mingw32/x64 (64-bit)
## Running under: Windows 10 x64 (build 18362)
## 
## Matrix products: default
## 
## locale:
## [1] LC_COLLATE=French_France.1252  LC_CTYPE=French_France.1252   
## [3] LC_MONETARY=French_France.1252 LC_NUMERIC=C                  
## [5] LC_TIME=French_France.1252    
## 
## attached base packages:
## [1] stats     graphics  grDevices utils     datasets  methods   base     
## 
## other attached packages:
##  [1] plotly_4.9.0        formattable_0.2.0.1 data.table_1.12.2  
##  [4] kableExtra_1.1.0    ggplot2_3.2.1       tidyr_1.0.0        
##  [7] dplyr_0.8.3         plyr_1.8.4          stringr_1.4.0      
## [10] RColorBrewer_1.1-2  extrafont_0.17     
## 
## loaded via a namespace (and not attached):
##  [1] tidyselect_0.2.5  xfun_0.10         purrr_0.3.2      
##  [4] reshape2_1.4.3    colorspace_1.4-1  vctrs_0.2.0      
##  [7] htmltools_0.3.6   viridisLite_0.3.0 yaml_2.2.0       
## [10] rlang_0.4.0       later_0.8.0       pillar_1.4.2     
## [13] glue_1.3.1        withr_2.1.2       lifecycle_0.1.0  
## [16] munsell_0.5.0     gtable_0.3.0      rvest_0.3.4      
## [19] htmlwidgets_1.3   evaluate_0.14     labeling_0.3     
## [22] knitr_1.25        httpuv_1.5.2      crosstalk_1.0.0  
## [25] Rttf2pt1_1.3.7    highr_0.8         Rcpp_1.0.2       
## [28] xtable_1.8-4      readr_1.3.1       promises_1.0.1   
## [31] scales_1.0.0      backports_1.1.4   webshot_0.5.1    
## [34] jsonlite_1.6      mime_0.7          hms_0.5.1        
## [37] digest_0.6.21     stringi_1.4.3     shiny_1.3.2      
## [40] grid_3.6.1        tools_3.6.1       magrittr_1.5     
## [43] lazyeval_0.2.2    tibble_2.1.3      crayon_1.3.4     
## [46] extrafontdb_1.0   pkgconfig_2.0.3   zeallot_0.1.0    
## [49] ellipsis_0.3.0    xml2_1.2.2        assertthat_0.2.1 
## [52] rmarkdown_1.16    httr_1.4.1        rstudioapi_0.10  
## [55] R6_2.4.0          compiler_3.6.1

Jeremy WICQUART | | 2019-10-22 17:11:43